Sceodesic is a gene-program discovery algorithm. Given a single-cell RNA-seq dataset, Sceodesic allows the user to 1) discover meaniningful gene programs, 2) re-interpret individual genes' expression as gene program expression. It is described in the bioRxiv preprint “Navigating the manifold of single-cell gene coexpression to discover interpretable gene programs” by Sinan Ozbay, Aditya Parekh, and Rohit Singh.

pip install sceodesic